The Map of Life. Mapping mosses next?

Have you heard about the Map of Life? They just released their first demo version of the mapping program. The program integrates data on species distributions from a number of sources, such as, point data from collection records, local inventories, and regional checklists. You can either look up a particular species and see where it lives or choose a location in the world and see a list of the species that occur there.   

Thus far they have included Birds, Freshwater fishes, Reptiles, Amphibians, and Mammals. I have suggested to one of my fellow UConn alums, Adam Wilson, who is working on the project, that mosses be added to the mapping list next. Mosses are listed in the Global Biodiversity Inventory Facility (Gbif), so the data is available to add them to this project, but I am guessing that I will have to wait a while until mosses are included. What group would you like to see added to the mapping next? 

Check out the Map of Life program here

Below is an example of the maps that are produced. They use Google Maps and can show multiple layers of distribution data from different sources. The maps are fully interactive and allow you to zoom in to a particular area of interest. I think that this is going to be a really great resource for scientists and amateur naturalists. Imagine going on travels or a collecting trip and being able to pull up a list of all the species in your area, and also a map of previous collection sites so that you can hunt for organisms. (This does assume that you have a fancy phone with web capabilities for the field and that you are not somewhere too remote for a signal.) However, I think that this would be a useful tool prior to heading into the field or for planning a collecting trip.

As an example, this is the distribution map from the smooth earthsnake that I posted about last week.

Some additional information

 - An article from Popular Science talking about the Map of Life.

 - An article in Trends in Ecology & Evolution about the project.

Spore Dispersal by Snakes

I tend to avoid snakes in life in general, but this snake is having a super cool interaction with a moss. If you look closely, it appears that this smooth earthsnake is covered in moss spores!

Close-up of the snake's head.

Close-up of the bright green spores coming out of the moss capsule. 

What do you think? I think that they look like spores on the snake. How long will they stick or how far can the snake go without them falling off? Easy to guess, hard to measure.  Probably a little ways, maybe further depending on how quickly they dry and the cover of plants the snake is crawling through. I think that spore dispersal by animals is a very interesting phenomenon and is under documented in the literature. Have a favorite spore dispersing creature or photos you would like to share?

Thanks to Tobias Landberg, a postdoctoral researcher at Murray State University in Kentucky, for taking and sending me these photos.

Moss Sperm Surviving Desiccation

When I think about moss reproduction, I usually think about the fact that mosses have flagellated sperm that require water to swim to the female archegonium that holds the egg. Researchers at Portland State University have been thinking about sperm survival when desiccated. I think that this is a really interesting question. Imagine that it rains and a moss sperm begins its journey swimming toward and egg. What happens if mid-travel the water dries up and the sperm is stranded? Can the sperm cell survive and resume its journey when it is wet again? 

In this study, the effects of desiccation on sperm cells were examined in three moss species.

Shortlidge, E. E., Rosenstiel, T. N. and Eppley, S. M. 2012. Tolerance to environmental desiccation in moss sperm. New Phytologist 194: 741–750.

They found that a fraction of the sperm were able to survive desiccation (e.g., Ceratodon purpureus, on average 17% survived) and the desiccation tolerance did not vary significantly among species. These results indicate the possibility of a sperm bank existing on the landscape. I have heard about a seed bank and a spore bank, but had not thought about a sperm bank before. I think that this is a pretty cool idea and as the authors mention has significant implications for understanding moss mating systems. That is just one finding from this paper. There is a lot more about desiccation tolerance, the effect of sucrose on sperm survival, and sperm variation. I highly recommend checking out this paper if you are interested in learning more. I think that it is good science and a well-written research article. Kudos to the authors. 

May 2012 Desktop Calendar

Well my hopes for April, when I said I was going to make some time for blog posting, were not realized. Not a single post. Except for the calendar. May will hopefully be better, thought starting off with a calendar post on day 11 is not the best start.

I have decided to blame the lack of April posts on an ongoing case of poison ivy and the delay in the calendar on graduation last weekend. May productivity here I come!

Below, on the calendar, is an unidentified Grimmiaceae from my collecting trip to Kansas and Missouri in March. This little tuft is going to remind me to get things done and to identify him/her by the end of the month. Maybe blog posting on monthly goals is good motivation?

If you are interested in downloading this desktop calendar follow the instructions below.

1 - Single click on the image to open it up in a new window. (If you use the image directly from the blog post you will loose a lot of resolution.)

2 - Right-click (or ctrl-click) on the image, and chose the option that says, "Set as Desktop Background" or "Use as Desktop Picture". The wording may vary.

3 - If the image does not fit your desktop neatly, you may have to adjust the image (Mac: System Preferences > Desktop > Screen Saver > Desktop; Windows: Control Panel > Display > Desktop) and choose "Fill screen" as the display mode of your background image.

Any issues or suggestions please let me know. These calendars are an experiment in-progress.

April 2012 Desktop Calendar

Below is an image of Physcomitrium hookerii from the collecting trip I made to Missouri and Kansas a couple of weeks back. I have some additional photos from my travels to post up. Maybe April will have a little more space for blog posting.

If you are interested in downloading this desktop calendar follow the instructions below.

1 - Single click on the image to open it up in a new window. (If you use the image directly from the blog post you will loose a lot of resolution.)

2 - Right-click (or ctrl-click) on the image, and chose the option that says, "Set as Desktop Background" or "Use as Desktop Picture". The wording may vary.

3 - If the image does not fit your desktop neatly, you may have to adjust the image (Mac: System Preferences > Desktop > Screen Saver > Desktop; Windows: Control Panel > Display > Desktop) and choose "Fill screen" as the display mode of your background image.

Any issues or suggestions please let me know. These calendars are an experiment in-progress.

Naming Species After Scientists?

My former labmate Dr. Juan Carlos Villarreal recently described a new species of hornworts from Columbia.

Villarreal A., Juan Carlos; Campos S., Laura Victoria; Uribe-M., Jaime; Goffinet, Bernard. 2012. Parallel Evolution of Endospory within Hornworts: Nothoceros renzagliensis (Dendrocerotaceae), sp. nov. Systematic Botany 37: 31-37.

Hornworts are a separate lineage of bryophytes that are named for the morphology of the sporophytes. They open by two vertical slits splitting the sporangium into two halves starting at the apex. To the right is an image of several elongated sporophytes sticking out of the frilly gametophyte thallus below. The tallest sporophyte is splitting at the top. However, this is not the new species, but a plant that grew in one of the other cultures that I was growing in the laboratory. 

The new species, Nothoceros renzagliensis is named after Dr. Karen S. Renzaglia, who is a professor at Southern Illinois University. Her research focuses on early land plant anatomy, morphology, and systematics. Juan Carlos completed his master's thesis studying hornworts in her laboratory.

I think that it is fabulous that Juan Carlos named this plant after his former advisor. She is a great scientist who has contributed significantly to the field of bryology. I am completely in favor of naming species in dedication to scientists who have contributed significantly to the study of a particular group of organisms. 

The only time I have been involved in naming a species was for the fern ally Isoetes tennesseensis. This species is endemic to Tennessee, hence the name.

What do you think? Should the specific epithets of scientific names contain information about the region where the organism is found or some other salient morphological feature? Or do you like the idea of naming plants or animals in tribute to great scientists?

March 2012 Desktop Calendar

This is the moss Anacamptodon splachnoides. I just love the sound of that name! You can read more about this species in two earlier posts (Post #1 here & Post #2 here). 

With snow on the ground here in Connecticut hopefully this image will help me last until the green has arrived this spring.
 

If you are interested in downloading this desktop calendar follow the instructions below. 

1 - Single click on the image to open it up in a new window. (If you use the image directly from the blog post you will loose a lot of resolution.)

2 - Right-click (or ctrl-click) on the image, and chose the option that says, "Set as Desktop Background" or "Use as Desktop Picture". The wording may vary.  

3 - If the image does not fit your desktop neatly, you may have to adjust the image (Mac: System Preferences > Desktop > Screen Saver > Desktop; Windows: Control Panel > Display > Desktop) and choose "Fill screen" as the display mode of your background image.

Any issues or suggestions please let me know. These calendars are an experiment in-progress.

Did Mosses Ruin the Planet?

The mosses crept out of the ocean, covering the bare rocks on our desolate planet over 400 million years ago. They sped up the chemical weathering of the rocks and decreased atmospheric carbon dioxide. These nefarious changes triggered glaciation events and a mass marine extinction! Muahahaha...... (yes mosses have an evil laugh) and that is how mosses conquered the land.

A couple of weeks ago, research was published examining the above scenario. The researchers carried out an experiment where they examined the ability of the moss Physcomitrella patens to weather rocks. One of the thoughts was that since mosses do not have true roots they might not alter substrates, such as rocks, in a similar manner. However, they found that the mosses secreted several different organic acids, just like vascular plants. Thus they have the ability to break down and weather rocks. This secretion of organic acids by mosses was not something I had heard about before. Their experiment only examined weathering with and without mosses. But when colonizing land the mosses were not alone. They would have been accompanied by fungi too. The researchers anticipate that the mosses in conjunction with fungal symbionts may even have greater weathering abilities!

Overall I think that it is a really interesting study connecting the colonization of land by mosses to historic patterns of climate change. It shows just how powerful and important plants are for life on our planet! 

Timothy M. Lenton, Michael Crouch, Martin Johnson, Nuno Pires, and Liam Dolan. 2012. First plants cooled the Ordovician. Nature Geoscience 5:86–89.

This post was inspired by a friend who sent me a link to this sarcastic and funny article about this research. I take mild offense to the author calling the mosses names, but otherwise I enjoyed the piece. Thanks Emily!

A Desktop Calendar Experiment

I change the background image on my computer once a month and I really like having a calendar on my computer desktop, since I don't have a wall calendar in the office. For the past several years I have been using the desktop calendars from Chocolate and Zucchini, a food blog that I follow. Unfortunately, she is no longer making the images with calendars. Thus I was left with a dilemma. I need to find a new place to get my desktop calendars. I didn't find any that I really wanted to look at for a month, so I decided to make my own. I have a lot of bryophyte images that I wouldn't mind looking at for a month and here is the result. 

If you are interested in downloading this desktop calendar follow the instructions below. 

1 - Single click on the image to open it up in a new window. (If you use the image directly from the blog post you will loose a lot of resolution.)

2 - Right-click (or ctrl-click) on the image, and chose the option that says, "Set as Desktop Background" or "Use as Desktop Picture". The wording may vary.  

3 - If the image does not fit your desktop neatly, you may have to adjust the image (Mac: System Preferences > Desktop & Screen Saver > Desktop; Windows: Control Panel > Display > Desktop) and choose "Fill screen" as the display mode of your background image.

I hope that the image comes through with enough resolution and that I positioned the calendar well so that it doesn't get cut off. Any issues or suggestions please let me know. This is totally an experiment and we shall see how it goes.

And I almost forgot the bryological information. These are leafy gametophytes of the moss Funaria hygrometrica (cord moss) that I grew in the laboratory. It is a population from Connecticut that I used for my PhD research. 

Berry Go Round #48

Welcome to the January 2012 edition of Berry Go Round!  Here are some interesting botanical posts that I found from the past month. Enjoy!

- Have you heard about the plants that eat nematodes? If not, head over to Cunabulum to read all about the genus Philcoxia and the research into these carnivorous plants.

- For those that love botanical history, here is the tale of Aven Nelson and the Laramie columbine at In the Company of Plants and Rocks. The photos of the Wyoming landscape have me thinking about traveling out west. The discussion of naming different granite types is a vignette that all taxonomists can enjoy.

- This month the U.S. Department of Agriculture (USDA) published a new Plant Hardiness Zone Map for 2012. The release of this new map was mentioned on quite a number of gardening blogs. I found the discussion at Greg Laden's Blog to be the most interesting. The comments center on how this revised map may influence thinking surrounding climate change.

- There is a super cool story about solar-powered sea slugs at Postdoc Exploring. These slugs are feeding on the chloroplasts from algae, incorporating them into their cells, and then using them to photosynthesize. There are several videos to watch. In one, you can see the slug slurping the chloroplasts from inside the algae, like drinking through a straw.

- This is a blog that is totally new to me. It is called Phytography. A botanical word of the day is explained through amazing photos of plants from New Zealand. I am especially partial to furrow on Jan 1st and spiral on Jan 26th. Which one is your favorite?   

- I am still longing for a real vacation, since finishing up my PhD in December and have been imaging an escape to points south over spring break. Maybe I will head to South Carolina. Anybody Seen My Focus? has two posts (evening and morning) highlighting a winter trip to the Savannah National Wildlife Refuge in South Carolina. Some of the grasses are a little brown this time of the year, but overall there is way more green than we have here in Connecticut and it looks like a nice place to visit. I am imagining water, hiking, plants, and being far away from my computer. Any other suggestions?

- Thinking of painting your house in 2012? How about covering it in plants instead? Seeds Aside has some lovely photos of a museum in Paris that is covered in an abundance of plant life. 

- The Phytophactor discusses the invention of dichotomous keys and a recent article that highlights an image-based key that predates text-based dichotomous keys by 100 years. You can check out scans of the original drawings used in this image-based key here at the Royal Society.

Stay tuned for February's Berry Go Round hosted at A Blog Around The Clock.

Growing on Trees in Acadia National Park

My first volume of the journal Bryologist for 2012 has arrived. Thus, I am trying to finish up my reading of articles from 2011. The last one I had to read looked at the interaction between the rain/fog chemistry, the type of tree, and the lichens and bryophytes living on the trees.

Natalie L. Cleavitt, Holly A. Ewing, Kathleen C. Weathers, and Amanda M. Lindsey. 2011. Acidic atmospheric deposition interacts with tree type and impacts the cryptogamic epiphytes in Acadia National Park, Maine, USA. The Bryologist 114 (3): 570-582.

I have been asked several times about whether there are different types of bryophytes that grow on different types of trees. This study really got me thinking about the importance of substrates for bryophytes and lichens. 

Some of their findings...

- Sites with less acidic fog have higher epiphyte biomass.
- Spruce bark is generally more acidic (lower pH) than maple bark. 

(This is not something new but definitely something I want to keep in mind when talking to people about the pH of the bark of different species of trees.) 

- Fog sulfate content and bark pH were good predictors of macro-lichen composition.

vary along the length of a single trunk.

Overall it was a really cool study and I would highly recommend it if you are interested in thinking about the influence of polluted rain/fog on both lichens and bryophytes.

Is the plural Calyptrae or Calyptras?

The moss calyptra is a small cap of gametophyte tissue that covers the apex of the moss sporophyte during its development. This little structure was the focus of my dissertation. Below is part of a figure that I used in my defense showing calyptra from several different moss species. The calyptrae are indicated by the orange arrows

 

This discussion may seem (ok) is pretty esoteric, but a reviewer on my last manuscript brought up this question. They proposed using calyptras as the plural of calyptra, rather than calyptrae. (Yes, these are the things that I think about for my job.)

This is part of the reviewer response that I sent to the editors regarding this question.

We agree that there are challenges when adopting terms into other languages especially concerning the plural form of the word. The term calyptra is derived from the Greek word kalyptra, meaning veil or hood. The plural for the Greek word kalyptra is kalyptrai. However, with the change in spelling and its use in other languages the term has been latinized. Often Greek plurals ending in –ai are transformed into –ae (e.g., mycorrhizae, cypselae, thecae). Perhaps this was originally a spelling error, but at least in terms of the moss calyptra the –ae ending has persisted. In the two most widely used bryological glossaries (see references below) the plural form is cited as calyptrae and many papers and books use this plural form. I do not think that retaining this traditionally used plural form makes the study any less accessible to non-bryologists as there are other botanical terms that have similar plural forms. Thus, we would prefer to continue to use calyptrae as the plural form in our manuscript. Additionally, switching to an –s ending would require additional explanation, which is outside of the manuscript’s focus.

- Magill, RE. 1990. Glossarium polyglottum bryologiae: A multilingual glossary for bryology. Missouri Botanical Garden.

- Malcolm, B and N Malcolm. 2000. Mosses and other bryophytes an illustrated glossary. Micro-Optics Press.

Thanks to my colleague Nic Tippery who contributed to this explanation and I consult on all words Greek and Latin.